If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ), 'gf_id' => 'HOM05D000820', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000820' ), 'data_identifier' => 'HOM05D000820', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000820', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '724', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p24090' => 'bna', 'A03p05520' => 'bna', 'A03p05540' => 'bna', 'A03p30020' => 'bna', 'A03p53230' => 'bna', 'A03p67560' => 'bna', 'A05p00760' => 'bna', 'A08p33150' => 'bna', 'A09p18890' => 'bna', 'A09p26340' => 'bna', 'A09p64240' => 'bna', 'Aa31LG1G2810' => 'aar', 'Aa31LG2G11300' => 'aar', 'Aa31LG9G9820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4961' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.597' => 'aag', 'Actinidia02351' => 'ach', 'Actinidia09724' => 'ach', 'Actinidia11864' => 'ach', 'Actinidia17739' => 'ach', 'Actinidia21903' => 'ach', 'Actinidia21904' => 'ach', 'Actinidia24556' => 'ach', 'Actinidia27206' => 'ach', 'Ah.01g003810' => 'amhyb', 'Ah.06g190710' => 'amhyb', 'Ah.07g203540' => 'amhyb', 'Ah.09g234650' => 'amhyb', 'Ah.10g026820' => 'amhyb', 'Ah.10g026850' => 'amhyb', 'Ah.14g087920' => 'amhyb', 'AL1G23090' => 'aly', 'AL1G67100' => 'aly', 'AL2G13640' => 'aly', 'AL2G28160' => 'aly', 'AL6G47930' => 'aly', 'Aqoxy1G03106' => 'aox', 'Aqoxy1G03376' => 'aox', 'Aqoxy2G02485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01NQBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WKT9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.41NYL5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9H00G3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3FY7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7KX1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM8NJM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIT9JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0BSDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9QBWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY0XIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PRV904' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8WU48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SG55F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0A8D9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP0R3F' => 'arhy', 'AT1G11910' => 'ath', 'AT1G62290' => 'ath', 'AT1G69100' => 'ath', 'AT4G04460' => 'ath', 'AT4G22050' => 'ath', 'ATR0317G079' => 'atr', 'ATR0796G306' => 'atr', 'Atru.chr10.2261' => 'acertr', 'Atru.chr12.1542' => 'acertr', 'Atru.chr2.3487' => 'acertr', 'Atru.chr4.3180' => 'acertr', 'Atru.chr4.3181' => 'acertr', 'Atru.chr6.3219' => 'acertr', 'AUR62000476' => 'cqu', 'AUR62002536' => 'cqu', 'AUR62006817' => 'cqu', 'AUR62006819' => 'cqu', 'AUR62012737' => 'cqu', 'AUR62021918' => 'cqu', 'AUR62023656' => 'cqu', 'AUR62037601' => 'cqu', 'AUR62042305' => 'cqu', 'BcaB01g01805' => 'bca', 'BcaB01g02594' => 'bca', 'BcaB01g05411' => 'bca', 'BcaB03g13222' => 'bca', 'BcaB05g25246' => 'bca', 'BcaB07g31142' => 'bca', 'BcaC01g00755' => 'bca', 'BcaC02g10489' => 'bca', 'BcaC04g21290' => 'bca', 'BcaC04g22082' => 'bca', 'BcaC06g31887' => 'bca', 'BcaNung00817' => 'bca', 'BcaNung01708' => 'bca', 'BolC3t13150H' => 'bol', 'BolC3t13151H' => 'bol', 'BolC3t15939H' => 'bol', 'BolC3t20674H' => 'bol', 'BolC4t24373H' => 'bol', 'BolC7t44674H' => 'bol', 'BolC7t44675H' => 'bol', 'BolC8t49132H' => 'bol', 'BolC8t52323H' => 'bol', 'BolC8t52814H' => 'bol', 'BolC9t55289H' => 'bol', 'BraA01t02322Z' => 'bra', 'BraA01t02712Z' => 'bra', 'BraA03t09891Z' => 'bra', 'BraA03t09893Z' => 'bra', 'BraA03t12188Z' => 'bra', 'BraA03t14392Z' => 'bra', 'BraA08t35233Z' => 'bra', 'BraA09t37509Z' => 'bra', 'BraA09t38207Z' => 'bra', 'BraA09t41768Z' => 'bra', 'C03p06440' => 'bna', 'C03p06450' => 'bna', 'C03p06470' => 'bna', 'C03p06500' => 'bna', 'C03p06510' => 'bna', 'C03p36280' => 'bna', 'C04p28270' => 'bna', 'C07p41420' => 'bna', 'C07p41430' => 'bna', 'C08p15020' => 'bna', 'C08p47850' => 'bna', 'C08p52990' => 'bna', 'C09p23670' => 'bna', 'C09p33500' => 'bna', 'CAN.G1014.22' => 'can', 'CAN.G123.8' => 'can', 'CAN.G1248.17' => 'can', 'CAN.G1435.12' => 'can', 'CAN.G198.2' => 'can', 'CAN.G303.14' => 'can', 'CAN.G638.90' => 'can', 'CANSAT11G0390' => 'cansat', 'CANSAT54G2326' => 'cansat', 'CANSAT56G3056' => 'cansat', 'CANSAT64G1757' => 'cansat', 'CANSAT78G0189' => 'cansat', 'CARHR012240' => 'chi', 'CARHR049830' => 'chi', 'CARHR253050' => 'chi', 'Carub.0001s1158' => 'cru', 'Carub.0001s4154' => 'cru', 'Carub.0002s0271' => 'cru', 'Carub.0002s0711' => 'cru', 'Carub.0004s0069' => 'cru', 'Carub.0006s3225' => 'cru', 'Carub.0007s1929' => 'cru', 'Carub.0007s2122' => 'cru', 'Ca_00679_v3' => 'car', 'Ca_02331_v3' => 'car', 'Ca_09274_v3' => 'car', 'Ca_10201_v3' => 'car', 'Ca_21070_v3' => 'car', 'Ca_21357_v3' => 'car', 'CBR_g60060' => 'cbr', 'CBR_g60063' => 'cbr', 'CBR_g6320' => 'cbr', 'Cc02_g35860' => 'ccan', 'Cc03_g00020' => 'ccan', 'Cc05_g04080' => 'ccan', 'Cc09_g01440' => 'ccan', 'CDE04G0899' => 'cde', 'CDE04G1936' => 'cde', 'CDE06G1298' => 'cde', 'CDE06G1439' => 'cde', 'Cfa000187' => 'cfa', 'Cfa006770' => 'cfa', 'Cfa015243' => 'cfa', 'Cfa015742' => 'cfa', 'Cfa015743' => 'cfa', 'Cfa023450' => 'cfa', 'Cfa024912' => 'cfa', 'Ciclev10004801m.g' => 'ccl', 'Ciclev10008027m.g' => 'ccl', 'Ciclev10011525m.g' => 'ccl', 'Ciclev10014941m.g' => 'ccl', 'Ciclev10017754m.g' => 'ccl', 'CiPaw.01G127800' => 'cil', 'CiPaw.02G068800' => 'cil', 'CiPaw.03G158400' => 'cil', 'CiPaw.04G114300' => 'cil', 'CiPaw.07G036300' => 'cil', 'CiPaw.08G150000' => 'cil', 'CiPaw.08G171800' => 'cil', 'CiPaw.09G095300' => 'cil', 'CiPaw.10G073200' => 'cil', 'CiPaw.11G192200' => 'cil', 'ClCG01G021780' => 'cla', 'ClCG01G021790' => 'cla', 'ClCG03G004590' => 'cla', 'ClCG10G004970' => 'cla', 'COL.COLO4_05486' => 'col', 'COL.COLO4_09688' => 'col', 'COL.COLO4_10942' => 'col', 'COL.COLO4_20012' => 'col', 'COL.COLO4_20013' => 'col', 'COL.COLO4_31806' => 'col', 'Cpa.g.sc152.35' => 'cpa', 'Cpa.g.sc48.224' => 'cpa', 'Cpa.g.sc648.1' => 'cpa', 'Cpa.g.sc684.2' => 'cpa', 'Cpa.g.sc87.102' => 'cpa', 'Cre04.g226850' => 'cre', 'CsaV3_1G010600' => 'csa', 'CsaV3_3G004650' => 'csa', 'CsaV3_6G048840' => 'csa', 'CSS0008129' => 'camsi', 'CSS0015161' => 'camsi', 'CSS0016377' => 'camsi', 'CSS0017635' => 'camsi', 'CSS0021160' => 'camsi', 'CSS0025217' => 'camsi', 'CSS0025396' => 'camsi', 'CSS0028425' => 'camsi', 'CSS0037075' => 'camsi', 'CSS0038126' => 'camsi', 'CSS0041458' => 'camsi', 'CSS0047714' => 'camsi', 'DCAR_001888' => 'dca', 'DCAR_001889' => 'dca', 'DCAR_004232' => 'dca', 'DCAR_006589' => 'dca', 'DCAR_008170' => 'dca', 'DCAR_019268' => 'dca', 'DCAR_028227' => 'dca', 'Dinv05408' => 'din', 'Dinv13924' => 'din', 'Dinv20071' => 'din', 'Dinv24514' => 'din', 'Dinv24723' => 'din', 'Dinv30949' => 'din', 'Duzib138G0228' => 'dzi', 'Duzib151G0828' => 'dzi', 'Duzib151G1152' => 'dzi', 'Duzib160G0901' => 'dzi', 'Duzib170G0194' => 'dzi', 'Duzib211G0342' => 'dzi', 'Duzib213G0820' => 'dzi', 'Duzib235G1253' => 'dzi', 'ECA234G1185' => 'eca', 'ECA234G2443' => 'eca', 'ECA234G3584' => 'eca', 'ECA236G3583' => 'eca', 'ECA236G4183' => 'eca', 'ECA240G0061' => 'eca', 'ECA248G2348' => 'eca', 'EL10Ac1g01719' => 'bvu', 'EL10Ac3g06233' => 'bvu', 'EL10Ac4g09539' => 'bvu', 'EL10Ac4g09559' => 'bvu', 'EL10Ac8g20092' => 'bvu', 'Eucgr.A01109' => 'egr', 'Eucgr.B01820' => 'egr', 'Eucgr.D01351' => 'egr', 'Eucgr.F00741' => 'egr', 'Eucgr.H04133' => 'egr', 'Eucgr.H04134' => 'egr', 'Eucgr.K00787' => 'egr', 'Eucgr.K03308' => 'egr', 'FAN02G1037' => 'fan', 'FAN02G1716' => 'fan', 'FAN05G2720' => 'fan', 'FAN05G4770' => 'fan', 'FAN07G2460' => 'fan', 'FAN09G0541' => 'fan', 'FAN09G4478' => 'fan', 'FAN11G2313' => 'fan', 'FAN12G1150' => 'fan', 'FAN14G0959' => 'fan', 'FAN14G5846' => 'fan', 'FAN16G2546' => 'fan', 'FAN17G0081' => 'fan', 'FAN21G0014' => 'fan', 'FAN25G0333' => 'fan', 'FAN25G1140' => 'fan', 'FAN25G3063' => 'fan', 'FAN25G3802' => 'fan', 'FvH4_3g01710' => 'fve', 'FvH4_3g23140' => 'fve', 'FvH4_4g21720' => 'fve', 'FvH4_6g08500' => 'fve', 'FvH4_6g42880' => 'fve', 'Glyma.03G228200' => 'gma', 'Glyma.07G262600' => 'gma', 'Glyma.09G005600' => 'gma', 'Glyma.09G079900' => 'gma', 'Glyma.10G143500' => 'gma', 'Glyma.12G192350' => 'gma', 'Glyma.12G192401' => 'gma', 'Glyma.12G192451' => 'gma', 'Glyma.13G116700' => 'gma', 'Glyma.13G309966' => 'gma', 'Glyma.13G310032' => 'gma', 'Glyma.15G110200' => 'gma', 'Glyma.15G186400' => 'gma', 'Glyma.17G011500' => 'gma', 'Glyma.17G043200' => 'gma', 'Glyma.19G225500' => 'gma', 'Glyma.20G090900' => 'gma', 'Glyma.20G092000' => 'gma', 'Gohir.A01G082300' => 'ghi', 'Gohir.A02G059400' => 'ghi', 'Gohir.A02G059500' => 'ghi', 'Gohir.A06G149800' => 'ghi', 'Gohir.A08G023700' => 'ghi', 'Gohir.A08G204200' => 'ghi', 'Gohir.A10G012100' => 'ghi', 'Gohir.D01G068900' => 'ghi', 'Gohir.D02G065100' => 'ghi', 'Gohir.D02G065200' => 'ghi', 'Gohir.D06G156000' => 'ghi', 'Gohir.D08G034200' => 'ghi', 'Gohir.D08G221500' => 'ghi', 'Gohir.D10G011500' => 'ghi', 'Gorai.002G091100' => 'gra', 'Gorai.004G031800' => 'gra', 'Gorai.004G235200' => 'gra', 'Gorai.005G073800' => 'gra', 'Gorai.005G073900' => 'gra', 'Gorai.010G182400' => 'gra', 'Gorai.011G012800' => 'gra', 'GSVIVG01012684001' => 'vvi', 'GSVIVG01017701001' => 'vvi', 'GSVIVG01024459001' => 'vvi', 'GSVIVG01031327001' => 'vvi', 'GSVIVG01031329001' => 'vvi', 'GSVIVG01035243001' => 'vvi', 'GSVIVG01037685001' => 'vvi', 'HanXRQChr01g0004131' => 'han', 'HanXRQChr03g0073281' => 'han', 'HanXRQChr03g0088881' => 'han', 'HanXRQChr04g0102041' => 'han', 'HanXRQChr04g0127091' => 'han', 'HanXRQChr14g0445801' => 'han', 'HanXRQChr16g0506831' => 'han', 'HanXRQChr16g0515461' => 'han', 'HanXRQChr17g0557541' => 'han', 'Haze_00753' => 'cav', 'Haze_03987' => 'cav', 'Haze_06827' => 'cav', 'Haze_09708' => 'cav', 'Haze_12812' => 'cav', 'Haze_26267' => 'cav', 'Haze_26827' => 'cav', 'Hma1.2p1_0036F.1_g023410' => 'hma', 'Hma1.2p1_0298F.1_g117660' => 'hma', 'Hma1.2p1_0759F.1_g213910' => 'hma', 'Hma1.2p1_0895F.1_g233810' => 'hma', 'Hma1.2p1_1067F.1_g253860' => 'hma', 'HPP92_001178' => 'vpl', 'HPP92_002957' => 'vpl', 'HPP92_021326' => 'vpl', 'HPP92_024328' => 'vpl', 'Hund00948' => 'sun', 'Hund07272' => 'sun', 'Hund07833' => 'sun', 'Hund21423' => 'sun', 'Hund21833' => 'sun', 'Hund22640' => 'sun', 'Hund23448' => 'sun', 'Lalb_Chr02g0147541' => 'lal', 'Lalb_Chr11g0073581' => 'lal', 'Lalb_Chr11g0073591' => 'lal', 'Lalb_Chr15g0077761' => 'lal', 'Lalb_Chr18g0046221' => 'lal', 'Lalb_Chr18g0056551' => 'lal', 'Lalb_Chr20g0118811' => 'lal', 'Lalb_Chr20g0118821' => 'lal', 'Lj1C1233G15' => 'lonja', 'Lj1C769G7' => 'lonja', 'Lj1g0016555' => 'lja', 'Lj1g0018812' => 'lja', 'Lj2C266T3' => 'lonja', 'Lj2g0011321' => 'lja', 'Lj3C842G6' => 'lonja', 'Lj3g0005094' => 'lja', 'Lj3g0009718' => 'lja', 'Lj3g0022717' => 'lja', 'Lj4g0018307' => 'lja', 'Lj5A319G47' => 'lonja', 'Lj5g0004735' => 'lja', 'Lj6g0008732' => 'lja', 'Lj6g0015657' => 'lja', 'Lj9A234G25' => 'lonja', 'Lj9A235G11' => 'lonja', 'Lj9C231G5' => 'lonja', 'Lj9C232T2' => 'lonja', 'Lju99A0T18' => 'lonja', 'Lju99A3G23' => 'lonja', 'Lju99A4G27' => 'lonja', 'Lju99A4G28' => 'lonja', 'Lju99A4T26' => 'lonja', 'Lju99C0T5' => 'lonja', 'Lju99C2T8' => 'lonja', 'Lju99C5G8' => 'lonja', 'Lsat_1_v5_gn_1_129521' => 'lsa', 'Lsat_1_v5_gn_4_59160' => 'lsa', 'Lsat_1_v5_gn_4_59200' => 'lsa', 'Lsat_1_v5_gn_4_61141' => 'lsa', 'Lsat_1_v5_gn_4_61161' => 'lsa', 'Lsat_1_v5_gn_4_61261' => 'lsa', 'Lsat_1_v5_gn_4_61441' => 'lsa', 'Lsat_1_v5_gn_7_91320' => 'lsa', 'Lsat_1_v5_gn_9_107000' => 'lsa', 'Lsat_1_v5_gn_9_82301' => 'lsa', 'Manes.03G132100' => 'mes', 'Manes.03G213100' => 'mes', 'Manes.09G181200' => 'mes', 'Manes.13G068000' => 'mes', 'Manes.15G068900' => 'mes', 'Manes.16G004300' => 'mes', 'Manes.17G029012' => 'mes', 'Mapoly0090s0082' => 'mpo', 'Mapoly0108s0063' => 'mpo', 'MBI07_g25503_MAGBIO' => 'mbi', 'MBI10_g35589_MAGBIO' => 'mbi', 'MBI19_g37072_MAGBIO' => 'mbi', 'MCO02G459' => 'mco', 'MD00G1159300' => 'mdo', 'MD04G1186500' => 'mdo', 'MD04G1186600' => 'mdo', 'MD05G1349700' => 'mdo', 'MD09G1111100' => 'mdo', 'MD10G1324400' => 'mdo', 'MD11G1213600' => 'mdo', 'MD13G1138100' => 'mdo', 'MD15G1413400' => 'mdo', 'MD16G1133900' => 'mdo', 'MD17G1098900' => 'mdo', 'MD17G1282600' => 'mdo', 'MD17G1282700' => 'mdo', 'Medtr1g484940' => 'mtr', 'Medtr2g023910' => 'mtr', 'Medtr2g045420' => 'mtr', 'Medtr4g123563' => 'mtr', 'Medtr4g132420' => 'mtr', 'Medtr7g111530' => 'mtr', 'MELO3C002442.2' => 'cme', 'MELO3C007408.2' => 'cme', 'MELO3C007517.2' => 'cme', 'MELO3C014161.2' => 'cme', 'MELO3C027600.2' => 'cme', 'MELO3C027678.2' => 'cme', 'MELO3C028759.2' => 'cme', 'MELO3C028847.2' => 'cme', 'MELO3C029980.2' => 'cme', 'MELO3C030768.2' => 'cme', 'MELO3C031181.2' => 'cme', 'MELO3C032410.2' => 'cme', 'MELO3C034414.2' => 'cme', 'MELO3C034652.2' => 'cme', 'MELO3C034879.2' => 'cme', 'Migut.B00882' => 'egut', 'Migut.H01578' => 'egut', 'Migut.M00441' => 'egut', 'Migut.M01341' => 'egut', 'MSTRG.13133' => 'ama', 'MSTRG.14635' => 'ama', 'MSTRG.14852' => 'ama', 'MSTRG.16001' => 'ama', 'MSTRG.16429' => 'ama', 'MSTRG.7194' => 'ama', 'Nitab4.5_0000005g0200' => 'nta', 'Nitab4.5_0000130g0350' => 'nta', 'Nitab4.5_0000696g0020' => 'nta', 'Nitab4.5_0000800g0030' => 'nta', 'Nitab4.5_0000977g0080' => 'nta', 'Nitab4.5_0001409g0030' => 'nta', 'Nitab4.5_0001462g0050' => 'nta', 'Nitab4.5_0002541g0050' => 'nta', 'Nitab4.5_0003573g0020' => 'nta', 'Nitab4.5_0003815g0040' => 'nta', 'Nitab4.5_0005662g0020' => 'nta', 'Nitab4.5_0006031g0020' => 'nta', 'Nitab4.5_0007110g0010' => 'nta', 'Nitab4.5_0007166g0040' => 'nta', 'Nn1g03462' => 'nnu', 'Nn1g04283' => 'nnu', 'Nn1g07215' => 'nnu', 'Nn2g14798' => 'nnu', 'Nn3g21948' => 'nnu', 'Nn3g21949' => 'nnu', 'Nn3g21950' => 'nnu', 'Nn3g21951' => 'nnu', 'Nn4g24963' => 'nnu', 'Nn4g25337' => 'nnu', 'Nn4g25338' => 'nnu', 'Oeu037956.1' => 'oeu', 'Oeu041270.2' => 'oeu', 'Oeu051202.1' => 'oeu', 'Oeu061902.1' => 'oeu', 'Oeu062780.1' => 'oeu', 'Os01g0290000' => 'osa', 'Os01g0631900' => 'osa', 'Os01g0663400' => 'osa', 'Os05g0137400' => 'osa', 'Os05g0567100' => 'osa', 'Os08g0255500' => 'osa', 'Peaxi162Scf00007g00318' => 'pax', 'Peaxi162Scf00178g00147' => 'pax', 'Peaxi162Scf00194g00019' => 'pax', 'Peaxi162Scf00307g01424' => 'pax', 'Peaxi162Scf00316g00340' => 'pax', 'Peaxi162Scf00394g00014' => 'pax', 'Peaxi162Scf00492g00057' => 'pax', 'Peaxi162Scf00492g00510' => 'pax', 'PGR004G0033' => 'pgr', 'PGR004G2030' => 'pgr', 'PGR031G1753' => 'pgr', 'PGR042G2020' => 'pgr', 'PGR042G3594' => 'pgr', 'PGR083G1282' => 'pgr', 'PGR142G1646' => 'pgr', 'PGSC0003DMG400013439' => 'stu', 'PGSC0003DMG400015016' => 'stu', 'PGSC0003DMG400016442' => 'stu', 'PGSC0003DMG400018283' => 'stu', 'PGSC0003DMG400022062' => 'stu', 'PGSC0003DMG400030172' => 'stu', 'Phvul.001G222100' => 'pvu', 'Phvul.003G080800' => 'pvu', 'Phvul.003G125000' => 'pvu', 'Phvul.006G147900' => 'pvu', 'Phvul.007G205100' => 'pvu', 'Phvul.009G220600' => 'pvu', 'Potri.001G356900' => 'ptr', 'Potri.002G228300' => 'ptr', 'Potri.004G007600' => 'ptr', 'Potri.005G002800' => 'ptr', 'Potri.010G003400' => 'ptr', 'Potri.011G007600' => 'ptr', 'Potri.013G002200' => 'ptr', 'Pp3c15_10650' => 'ppa', 'Pp3c5_19520' => 'ppa', 'Pp3c6_10690' => 'ppa', 'PRCOL_00003674' => 'pco', 'Prupe.1G103000' => 'ppe', 'Prupe.3G214900' => 'ppe', 'Prupe.4G017700' => 'ppe', 'Prupe.4G217700' => 'ppe', 'Prupe.6G304600' => 'ppe', 'Psat1g017360' => 'psa', 'Psat1g179080' => 'psa', 'Psat3g015080' => 'psa', 'Psat4g005760' => 'psa', 'Psat4g020480' => 'psa', 'Psat5g271280' => 'psa', 'Psat6g155720' => 'psa', 'PSO210G1049' => 'pso', 'PSO210G5702' => 'pso', 'PSO541G1136' => 'pso', 'PSO675G6605' => 'pso', 'PSO761G0435' => 'pso', 'PSO832G0577' => 'pso', 'QL03p011002' => 'qlo', 'QL05p072525' => 'qlo', 'QL06p014529' => 'qlo', 'QL06p014567' => 'qlo', 'QL08p009183' => 'qlo', 'QL08p009191' => 'qlo', 'QL08p009261' => 'qlo', 'QL08p032201' => 'qlo', 'RcHm_v2.0_Chr2g0158811' => 'rch', 'RcHm_v2.0_Chr3g0458541' => 'rch', 'RcHm_v2.0_Chr4g0427921' => 'rch', 'RcHm_v2.0_Chr4g0427951' => 'rch', 'RcHm_v2.0_Chr5g0002571' => 'rch', 'RcHm_v2.0_Chr5g0040781' => 'rch', 'Rhsim04G0249300' => 'rsi', 'Rhsim04G0249400' => 'rsi', 'Rhsim05G0122800' => 'rsi', 'Rhsim06G0164200' => 'rsi', 'Rhsim10G0215400' => 'rsi', 'Rhsim10G0215500' => 'rsi', 'Rhsim11G0105100' => 'rsi', 'Rhsim13G0152000' => 'rsi', 'RhsimUnG0053500' => 'rsi', 'RhsimUnG0146600' => 'rsi', 'Sabra02G0174100' => 'sbr', 'Sabra04G0004400' => 'sbr', 'Sabra05G0000200' => 'sbr', 'Sabra05G0014300' => 'sbr', 'Sabra10G0002800' => 'sbr', 'Sabra11G0006500' => 'sbr', 'Sabra11G0009500' => 'sbr', 'Sabra13G0001600' => 'sbr', 'Sabra14G0117300' => 'sbr', 'Sabra16G0234900' => 'sbr', 'SalBow5G3933' => 'sbo', 'SalBow7G4040' => 'sbo', 'SalBow8G0806' => 'sbo', 'Sc05g0009340' => 'sci', 'Sc06g0005560' => 'sci', 'Sc12g0002240' => 'sci', 'Sc13g0008010' => 'sci', 'Sc17g0007500' => 'sci', 'Sed0019822' => 'sed', 'Sed0023296' => 'sed', 'Sed0023970' => 'sed', 'Sed0026314' => 'sed', 'Sed0027196' => 'sed', 'SEGI_02908' => 'sgi', 'SEGI_10038' => 'sgi', 'SEGI_15680' => 'sgi', 'SEGI_17470' => 'sgi', 'SEGI_24271' => 'sgi', 'SEGI_29960' => 'sgi', 'SEGI_32446' => 'sgi', 'SEGI_36918' => 'sgi', 'SEGI_36961' => 'sgi', 'SEGI_37307' => 'sgi', 'SEGI_40100' => 'sgi', 'SEGI_41087' => 'sgi', 'SGA_v2.0_scaffold117G32416' => 'sas', 'SGA_v2.0_scaffold49G18258' => 'sas', 'SGA_v2.0_scaffold4G01903' => 'sas', 'SGA_v2.0_scaffold7G03807' => 'sas', 'SMO356G0289' => 'smo', 'SMO356G0368' => 'smo', 'SMO356G0751' => 'smo', 'SMO364G0363' => 'smo', 'Solyc01g101240.4' => 'sly', 'Solyc02g032940.4' => 'sly', 'Solyc02g080880.4' => 'sly', 'Solyc03g005280.4' => 'sly', 'Solyc07g051850.3' => 'sly', 'Solyc09g082760.3' => 'sly', 'Sopen01g044690' => 'spe', 'Sopen02g011310' => 'spe', 'Sopen02g025570' => 'spe', 'Sopen03g001310' => 'spe', 'Sopen07g025450' => 'spe', 'Sopen09g031610' => 'spe', 'Sp1g10560' => 'spa', 'Sp2g02340' => 'spa', 'Sp2g05940' => 'spa', 'Sp6g04440' => 'spa', 'TAR365G0158' => 'tar', 'TAR624G1184' => 'tar', 'TAR626G1630' => 'tar', 'TAR627G0432' => 'tar', 'TAR636G0167' => 'tar', 'THA.LOC104806312' => 'tha', 'THA.LOC104809490' => 'tha', 'THA.LOC104809491' => 'tha', 'THA.LOC104813344' => 'tha', 'THA.LOC104818674' => 'tha', 'THA.LOC104820456' => 'tha', 'THA.LOC104823533' => 'tha', 'Thecc.01G176400' => 'tca', 'Thecc.04G314300' => 'tca', 'Thecc.04G314400' => 'tca', 'Thecc.05G329500' => 'tca', 'Thecc.06G224700' => 'tca', 'Thecc.07G032400' => 'tca', 'Thecc.07G032500' => 'tca', 'Thecc.07G032600' => 'tca', 'Thhalv10007418m.g' => 'esa', 'Thhalv10023414m.g' => 'esa', 'Thhalv10028587m.g' => 'esa', 'TPR.G11186' => 'tpr', 'TPR.G12675' => 'tpr', 'TPR.G15303' => 'tpr', 'TPR.G1617' => 'tpr', 'TPR.G20918' => 'tpr', 'TPR.G2593' => 'tpr', 'TPR.G29394' => 'tpr', 'TPR.G30030' => 'tpr', 'TPR.G33803' => 'tpr', 'TPR.G37124' => 'tpr', 'TPR.G40636' => 'tpr', 'TWI18G0908' => 'twi', 'TWI36G0463' => 'twi', 'TWI38G1156' => 'twi', 'TWI39G0595' => 'twi', 'TWI53G1496' => 'twi', 'TWI63G1832' => 'twi', 'TWI75G0268' => 'twi', 'unitig_32.g11038' => 'ugi', 'unitig_52.g17551' => 'ugi', 'unitig_699.g19620' => 'ugi', 'unitig_699.g19621' => 'ugi', 'unitig_749.g14112' => 'ugi', 'unitig_85.g27307' => 'ugi', 'vmacro01668' => 'vma', 'vmacro03676' => 'vma', 'vmacro08018' => 'vma', 'vmacro12191' => 'vma', 'vmacro18272' => 'vma', 'vmacro19762' => 'vma', 'VMungo0540G1259' => 'vmu', 'VMungo0720G1030' => 'vmu', 'VMungo1080G1837' => 'vmu', 'VMungo1215G2326' => 'vmu', 'VMungo1309G0323' => 'vmu', 'VMungo1383G0433' => 'vmu', 'Zm00001eb046200' => 'zma', 'Zm00001eb056740' => 'zma', 'Zm00001eb063850' => 'zma', 'Zm00001eb077950' => 'zma', 'Zm00001eb117200' => 'zma', 'Zm00001eb142100' => 'zma', 'Zm00001eb146590' => 'zma', 'Zm00001eb159100' => 'zma', 'Zm00001eb187990' => 'zma', 'Zm00001eb211810' => 'zma', 'Zm00001eb221450' => 'zma', 'Zm00001eb223360' => 'zma', 'Zm00001eb224780' => 'zma', 'Zm00001eb233460' => 'zma', 'Zm00001eb266550' => 'zma', 'Zm00001eb282380' => 'zma', 'Zm00001eb286690' => 'zma', 'Zm00001eb296120' => 'zma', 'Zm00001eb324290' => 'zma', 'Zm00001eb331050' => 'zma', 'Zm00001eb332290' => 'zma', 'Zm00001eb343950' => 'zma', 'Zm00001eb372460' => 'zma', 'Zm00001eb374490' => 'zma', 'Zm00001eb376470' => 'zma', 'Zm00001eb377800' => 'zma', 'Zm00001eb412850' => 'zma', 'Zm00001eb417480' => 'zma' ) $gf_id = 'HOM05D000820' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000820' ) $data_identifier = 'HOM05D000820' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 13, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 3, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 18, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 17, 'lja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 6, 'cme' => (int) 15, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 11, 'oeu' => (int) 5, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 10, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 12, 'sas' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 28 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417480' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1